COVID-19 Surveillance Data through 1 Oct 2026The SARS-CoV-2 epidemiological situation in the Czech Republic — daily cases, hospitalisations, testing and vaccination.
Ebola caused by Bundibugyo virus in DR Congo and Uganda Updated: Continuously (active outbreak) · v88 · 2026-09-25Current overview of the outbreak of Ebola disease caused by Bundibugyo virus in DR Congo and Uganda, as checked on 25 September 2026.
Hantavirus — MV Hondius cruise ship Data as of 2 Jul 2026Situation report on the Andes virus (hantavirus) outbreak linked to the MV Hondius cruise ship — overview, timeline, risk to the Czech Republic. Source: IMG CAS / UJEP.
Infectious Diseases — ISIN dashboard Data through 12/2025Overview of notified infectious diseases in the Czech Republic 2018–2025 from ÚZIS — regional map, top diagnoses, age structure and seasonal trends.
Influenza — regional surveillance Data through 27 Sep 2026 (week 39/26)Weekly laboratory detections of respiratory viruses by Czech region — from SZÚ/NRL weekly PDF reports, updated every week.
Influenza and respiratory viruses Data through 27 Sep 2026 (week 39/26)Virological surveillance of influenza and respiratory viruses in the Czech Republic — seasonal overviews 2012–2026, NIPH/NRL data.
Influenza Phylogeny (Nextstrain) — opens an external site Updated: Weekly (Nextstrain server)Phylogeny of seasonal influenza — H3N2, H1N1pdm and type B. Evolution of haemagglutinin and predictions for vaccine strain selection.
SARS-CoV-2 Phylogeny (Nextstrain) — opens an external site Updated: Daily (Nextstrain server)Phylogenetic evolution of SARS-CoV-2 in Europe including Czech sequences — an interactive tree of variants and their geographic spread.
Wastewater Monitoring — opens an external site Updated: ContinuousSurveillance of SARS-CoV-2 and polioviruses in municipal wastewater — an early warning signal for pathogen circulation at the population level.